Statements (26)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
|
| gptkbp:category |
gptkb:software
|
| gptkbp:citation |
over 4000 (as of 2024)
|
| gptkbp:field |
evolutionary biology
comparative genomics |
| gptkbp:firstPublished |
2003
|
| https://www.w3.org/2000/01/rdf-schema#label |
OrthoMCL
|
| gptkbp:input_data |
protein sequences
|
| gptkbp:latestReleaseVersion |
OrthoMCL 2.0.9
|
| gptkbp:license |
open source
|
| gptkbp:maintainedBy |
EuPathDB project
|
| gptkbp:original_publication_DOI |
10.1101/gr.1224503
|
| gptkbp:originalRelease |
Li, L., Stoeckert, C.J., Roos, D.S. (2003). OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes. Genome Research.
|
| gptkbp:output_data |
ortholog groups
paralog groups |
| gptkbp:programmingLanguage |
gptkb:Perl
|
| gptkbp:requires |
gptkb:MySQL_database
gptkb:BLAST |
| gptkbp:supports |
multiple species comparison
|
| gptkbp:type |
Markov Cluster Algorithm (MCL)
|
| gptkbp:used_in |
genome researchers
|
| gptkbp:usedFor |
ortholog identification
paralog identification |
| gptkbp:website |
https://orthomcl.org/
|
| gptkbp:bfsParent |
gptkb:Gene_database
|
| gptkbp:bfsLayer |
7
|