MDAnalysis

GPTKB entity

Statements (41)
Predicate Object
gptkbp:instanceOf gptkb:software
gptkbp:availableOn gptkb:GitHub
gptkb:PyPI
gptkbp:citation Michaud-Agrawal, N., et al. J. Comput. Chem. 2011, 32, 2319–2327.
Gowers, R. J., et al. Proceedings of the 15th Python in Science Conference, 2016.
gptkbp:documentation https://www.mdanalysis.org/docs/
gptkbp:firstReleased 2011
gptkbp:hasFeature plugin support
integration with NumPy
integration with SciPy
coordinate transformations
integration with pandas
contact analysis
distance calculations
RMSD calculations
atom selection
hydrogen bond analysis
integration with matplotlib
parallel analysis
secondary structure analysis
trajectory conversion
gptkbp:hasTutorial https://www.mdanalysis.org/pages/learn/
gptkbp:hasWebsite https://www.mdanalysis.org/
https://www.w3.org/2000/01/rdf-schema#label MDAnalysis
gptkbp:license gptkb:GNU_General_Public_License_v2.0
gptkbp:logo https://www.mdanalysis.org/images/logo.png
gptkbp:maintainedBy MDAnalysis Community
gptkbp:openSource true
gptkbp:supports gptkb:CHARMM
gptkb:NAMD
gptkb:GROMACS
gptkb:LAMMPS
gptkb:AMBER
trajectory analysis
structure analysis
various file formats
DL_POLY
gptkbp:usedFor molecular dynamics analysis
gptkbp:writtenBy gptkb:Python
gptkbp:bfsParent gptkb:NumFOCUS
gptkbp:bfsLayer 7