GEO database

GPTKB entity

Statements (49)
Predicate Object
gptkbp:instanceOf gptkb:database
gptkbp:abbreviation gptkb:GEO
gptkbp:access open access
gptkbp:category gptkb:dataset
genomics
bioinformatics
gptkbp:citation Edgar R, Domrachev M, Lash AE. Nucleic Acids Res. 2002 Jan 1;30(1):207-10.
gptkbp:contains next-generation sequencing data
ChIP-Seq data
RNA-Seq data
microarray data
high-throughput sequencing data
array-based data
gptkbp:dataSource gptkb:FTP
gptkb:REST_API
gptkb:mobile_application
gptkbp:dataSubmission researchers worldwide
gptkbp:focus gene expression
functional genomics
gptkbp:format gptkb:Series_Matrix
gptkb:MINiML
gptkb:SOFT
gptkbp:frequency continuous
gptkbp:fullName gptkb:Gene_Expression_Omnibus
https://www.w3.org/2000/01/rdf-schema#label GEO database
gptkbp:language English
gptkbp:launched 2000
gptkbp:license public domain
gptkbp:location gptkb:Bethesda,_Maryland,_USA
gptkbp:maintainedBy gptkb:National_Center_for_Biotechnology_Information
gptkbp:numberOfVolumes millions of samples
gptkbp:parentOrganization gptkb:National_Institutes_of_Health
gptkbp:recognizedBy gptkb:GDS
gptkb:GSM
gptkb:GPL
gptkb:GSE
gptkbp:relatedTo gptkb:SRA
gptkb:ArrayExpress
gptkbp:repository public repository
gptkbp:type epigenomic data
genomic data
expression profiling
gptkbp:usedBy biomedical researchers
gptkbp:usedFor meta-analysis
data mining
reproducibility studies
gptkbp:website https://www.ncbi.nlm.nih.gov/geo/
gptkbp:bfsParent gptkb:DNase-seq_data
gptkbp:bfsLayer 6