ASTRAL algorithm

GPTKB entity

Statements (23)
Predicate Object
gptkbp:instanceOf phylogenetic inference algorithm
gptkbp:alternativeTo BUCKy
MP-EST
STELLS
SVDquartets
gptkbp:basedOn quartet-based method
gptkbp:citation Mirarab S, Warnow T. 2015. ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes. Bioinformatics.
Zhang C, Rabiee M, Sayyari E, Mirarab S. 2018. ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees. BMC Bioinformatics.
gptkbp:developedBy gptkb:Siavash_Mirarab
gptkbp:firstPublished 2014
gptkbp:handles incomplete lineage sorting
https://www.w3.org/2000/01/rdf-schema#label ASTRAL algorithm
gptkbp:input gene trees
gptkbp:latestReleaseVersion gptkb:ASTRAL-III
gptkbp:output species tree
gptkbp:relatedTo coalescent theory
gptkbp:softwareAvailableAt https://github.com/smirarab/ASTRAL
gptkbp:usedBy evolutionary biologists
gptkbp:usedFor phylogenomics
species tree estimation
gptkbp:writtenBy gptkb:Java
gptkbp:bfsParent gptkb:Tandy_Warnow
gptkbp:bfsLayer 7