Triple

T8482772
Position Surface form Disambiguated ID Type / Status
Subject UniProt protein sequences E200557 entity
Predicate accessibleVia P1985 FINISHED
Object UniProt REST API
The UniProt REST API is a web service that allows programmatic access to UniProt’s protein sequence data and annotations for automated retrieval, analysis, and integration into bioinformatics workflows.
 E743049 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: UniProt REST API | Statement: [UniProt protein sequences, accessibleVia, UniProt REST API]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: UniProt REST API
Context triple: [UniProt protein sequences, accessibleVia, UniProt REST API]
  • A. UniProt Knowledgebase
    UniProt Knowledgebase is a comprehensive, curated database that provides detailed information on protein sequences and their functional annotations across numerous species.
  • B. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • C. UniProtKB/Swiss-Prot
    UniProtKB/Swiss-Prot is the manually curated, high-quality section of the UniProt Knowledgebase that provides reviewed protein sequence and functional annotation data.
  • D. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • E. UniProtKB/TrEMBL
    UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: UniProt REST API
Triple: [UniProt protein sequences, accessibleVia, UniProt REST API]
Generated description
The UniProt REST API is a web service that allows programmatic access to UniProt’s protein sequence data and annotations for automated retrieval, analysis, and integration into bioinformatics workflows.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: UniProt REST API
Target entity description: The UniProt REST API is a web service that allows programmatic access to UniProt’s protein sequence data and annotations for automated retrieval, analysis, and integration into bioinformatics workflows.
  • A. UniProt Knowledgebase
    UniProt Knowledgebase is a comprehensive, curated database that provides detailed information on protein sequences and their functional annotations across numerous species.
  • B. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • C. UniProtKB/Swiss-Prot
    UniProtKB/Swiss-Prot is the manually curated, high-quality section of the UniProt Knowledgebase that provides reviewed protein sequence and functional annotation data.
  • D. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • E. UniProtKB/TrEMBL
    UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ca831b17988190a1f3f3413d57b820 completed March 30, 2026, 2:05 p.m.
NER Named-entity recognition batch_69cbe53845e881909eeb32863c7aa942 completed March 31, 2026, 3:16 p.m.
NED1 Entity disambiguation (via context triple) batch_69ce88d3e2808190856ee01cc20fbaec completed April 2, 2026, 3:18 p.m.
NEDg Description generation batch_69ce8b61a8f48190aa4555d39056ee16 completed April 2, 2026, 3:29 p.m.
NED2 Entity disambiguation (via description) batch_69ce8c03480081909120e2f790fe4394 completed April 2, 2026, 3:32 p.m.
Created at: March 30, 2026, 6:12 p.m.