Triple

T8036808

Position	Surface form	Disambiguated ID	Type / Status
Subject	Johns Hopkins Institute for Genetic Medicine	`E187127`	entity
Predicate	affiliatedWith	`P254`	FINISHED
Object	McKusick-Nathans Department of Genetic Medicine The McKusick-Nathans Department of Genetic Medicine is a leading academic department at Johns Hopkins University dedicated to advancing research, education, and clinical care in human genetics and genomic medicine.	`E708570`	NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini

Instruction

Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).

Input

Phrase: McKusick-Nathans Department of Genetic Medicine | Statement: [Johns Hopkins Institute for Genetic Medicine, affiliatedWith, McKusick-Nathans Department of Genetic Medicine]

NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07

Target entity: McKusick-Nathans Department of Genetic Medicine
Context triple: [Johns Hopkins Institute for Genetic Medicine, affiliatedWith, McKusick-Nathans Department of Genetic Medicine]

A. Department of Human Genetics
The Department of Human Genetics is an academic unit at McGill University's Faculty of Medicine and Health Sciences dedicated to research and education on the genetic basis of human health and disease.
B. Department of Human Genetics
The Department of Human Genetics is a specialized academic and clinical unit at the University Medical Center Göttingen focused on research, diagnostics, and education in human genetic diseases and hereditary conditions.
C. Johns Hopkins Institute for Genetic Medicine
The Johns Hopkins Institute for Genetic Medicine is a research center at Johns Hopkins focused on advancing the understanding, diagnosis, and treatment of genetic and genomic diseases.
D. Department of Human Genetics, University of Chicago
The Department of Human Genetics at the University of Chicago is a leading academic and research department focused on understanding the genetic basis of human health, disease, and evolution.
E. Office of Rare Diseases Research
The Office of Rare Diseases Research is a U.S. government program that coordinates and supports research, information, and collaboration efforts focused on rare diseases.
F. None of above. chosen
G. Unsure - the case is ambiguous/there is not enough information to decide.

NEDg Description generation gpt-5.1

Instruction

Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"

Input

Entity: McKusick-Nathans Department of Genetic Medicine
Triple: [Johns Hopkins Institute for Genetic Medicine, affiliatedWith, McKusick-Nathans Department of Genetic Medicine]

Generated description

The McKusick-Nathans Department of Genetic Medicine is a leading academic department at Johns Hopkins University dedicated to advancing research, education, and clinical care in human genetics and genomic medicine.

NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07

Target entity: McKusick-Nathans Department of Genetic Medicine
Target entity description: The McKusick-Nathans Department of Genetic Medicine is a leading academic department at Johns Hopkins University dedicated to advancing research, education, and clinical care in human genetics and genomic medicine.

A. Department of Human Genetics
The Department of Human Genetics is a specialized academic and clinical unit at the University Medical Center Göttingen focused on research, diagnostics, and education in human genetic diseases and hereditary conditions.
B. Department of Human Genetics
The Department of Human Genetics is an academic unit at McGill University's Faculty of Medicine and Health Sciences dedicated to research and education on the genetic basis of human health and disease.
C. Johns Hopkins Institute for Genetic Medicine
The Johns Hopkins Institute for Genetic Medicine is a research center at Johns Hopkins focused on advancing the understanding, diagnosis, and treatment of genetic and genomic diseases.
D. Department of Human Genetics, University of Chicago
The Department of Human Genetics at the University of Chicago is a leading academic and research department focused on understanding the genetic basis of human health, disease, and evolution.
E. Office of Rare Diseases Research
The Office of Rare Diseases Research is a U.S. government program that coordinates and supports research, information, and collaboration efforts focused on rare diseases.
F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step	Stage	Batch ID	Status	When
creating	Elicitation	`batch_69ca82ae2d1081909dbfee42b41db419`	completed	March 30, 2026, 2:03 p.m.
NER	Named-entity recognition	`batch_69cb3f188e1c8190b92760c91d31f2df`	completed	March 31, 2026, 3:27 a.m.
NED1	Entity disambiguation (via context triple)	`batch_69cc56fa97ac8190a0bd646d9ec345e4`	completed	March 31, 2026, 11:21 p.m.
NEDg	Description generation	`batch_69cc58abd96c8190ab9eeaece67d5408`	completed	March 31, 2026, 11:28 p.m.
NED2	Entity disambiguation (via description)	`batch_69cc5cc2f71081909cb7c0c245368edb`	completed	March 31, 2026, 11:46 p.m.

Created at: March 30, 2026, 5:22 p.m.