Triple
T6004877
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | SOD1 |
E133684
|
entity |
| Predicate | orthologOf |
P51609
|
FINISHED |
| Object | yeast SOD1 |
E133684
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: yeast SOD1 | Statement: [SOD1, orthologOf, yeast SOD1]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: yeast SOD1 Context triple: [SOD1, orthologOf, yeast SOD1]
-
A.
SOD1
chosen
SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
-
B.
Saccharomyces cerevisiae
Saccharomyces cerevisiae is a species of yeast widely used in baking, brewing, and scientific research as a model eukaryotic organism.
-
C.
survival motor neuron protein
Survival motor neuron protein is an essential cellular protein required for the maintenance and function of motor neurons, whose deficiency leads to spinal muscular atrophy.
-
D.
Neurospora crassa
Neurospora crassa is a filamentous red bread mold fungus widely used as a model organism in genetics and molecular biology.
-
E.
Trichosphaeria sacchari
Trichosphaeria sacchari is a species of ascomycete fungus known as a plant pathogen, particularly associated with sugarcane.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c00872444c8190bfaf1739dcec765c |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c0560bae148190ad4755defaaf471b |
completed | March 22, 2026, 8:50 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c1088f5c84819094e4696c24c4dd79 |
completed | March 23, 2026, 9:31 a.m. |
Created at: March 22, 2026, 4:06 p.m.