Triple
T6004781
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | risdiplam |
E133682
|
entity |
| Predicate | affectsProtein |
P37224
|
FINISHED |
| Object | SMN protein |
E133680
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: SMN protein | Statement: [risdiplam, affectsProtein, SMN protein]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: SMN protein Context triple: [risdiplam, affectsProtein, SMN protein]
-
A.
SMN complex
The SMN complex is a multiprotein assembly crucial for the biogenesis of small nuclear ribonucleoproteins (snRNPs) and proper pre-mRNA splicing, with key roles in motor neuron survival.
-
B.
SMN1 gene
The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
-
C.
SMN2
SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
-
D.
SOD1
SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
-
E.
survival motor neuron protein
chosen
Survival motor neuron protein is an essential cellular protein required for the maintenance and function of motor neurons, whose deficiency leads to spinal muscular atrophy.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: affectsProtein Context triple: [risdiplam, affectsProtein, SMN protein]
-
A.
affectsBiologicalProcess
Indicates a relationship where one entity produces a change or influence on a biological process of another entity or system.
-
B.
affectsProgram
Indicates that one entity produces an influence or change on a program, altering its behavior, state, or outcome.
-
C.
hasProteinBinding
chosen
Indicates that one entity is capable of physically binding to or interacting specifically with a protein.
-
D.
areAffectedBy
Indicates that one entity experiences an effect, influence, or impact as a result of another entity or event.
-
E.
affectsVariant
Indicates that one entity has an influence or impact on a specific variant or version of another entity.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69c00872444c8190bfaf1739dcec765c |
completed | March 22, 2026, 3:19 p.m. |
| NER | Named-entity recognition | batch_69c04f10d18081908c351170b7f58d3d |
completed | March 22, 2026, 8:20 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69c11cdec5608190ad093a09acd32ebf |
completed | March 23, 2026, 10:58 a.m. |
| PD | Predicate disambiguation | batch_69c049e3316c819087ea635fa7ee8472 |
completed | March 22, 2026, 7:58 p.m. |
Created at: March 22, 2026, 4:06 p.m.