Triple
T4464671
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Graduate School of Information Science and Technology, Osaka University |
E98345
|
entity |
| Predicate | offersProgram |
P178
|
FINISHED |
| Object |
Bioinformatic Engineering
Bioinformatic Engineering is an interdisciplinary field that applies computational, mathematical, and engineering approaches to analyze biological data and solve complex problems in life sciences and medicine.
|
E441473
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Bioinformatic Engineering | Statement: [Graduate School of Information Science and Technology, Osaka University, offersProgram, Bioinformatic Engineering]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Bioinformatic Engineering Context triple: [Graduate School of Information Science and Technology, Osaka University, offersProgram, Bioinformatic Engineering]
-
A.
Department of Computational Biology and Medical Sciences
The Department of Computational Biology and Medical Sciences is an academic unit specializing in the integration of computational methods with biological and medical research to advance understanding of complex life and health systems.
-
B.
The Science of Computing
"The Science of Computing" is a foundational work by Peter J. Denning that explores the principles, theory, and practice underlying computer science as a scientific discipline.
-
C.
Center for Applied Genomics
The Center for Applied Genomics is a major pediatric genomics research institute specializing in identifying genetic factors underlying childhood diseases and advancing precision medicine.
-
D.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
E.
Master of Science in Bioinformatics (information sciences concentration)
The Master of Science in Bioinformatics (information sciences concentration) is a graduate program that trains students to apply computational, data science, and information management methods to biological and biomedical data analysis.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Bioinformatic Engineering Triple: [Graduate School of Information Science and Technology, Osaka University, offersProgram, Bioinformatic Engineering]
Generated description
Bioinformatic Engineering is an interdisciplinary field that applies computational, mathematical, and engineering approaches to analyze biological data and solve complex problems in life sciences and medicine.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Bioinformatic Engineering Target entity description: Bioinformatic Engineering is an interdisciplinary field that applies computational, mathematical, and engineering approaches to analyze biological data and solve complex problems in life sciences and medicine.
-
A.
Department of Computational Biology and Medical Sciences
The Department of Computational Biology and Medical Sciences is an academic unit specializing in the integration of computational methods with biological and medical research to advance understanding of complex life and health systems.
-
B.
The Science of Computing
"The Science of Computing" is a foundational work by Peter J. Denning that explores the principles, theory, and practice underlying computer science as a scientific discipline.
-
C.
Center for Applied Genomics
The Center for Applied Genomics is a major pediatric genomics research institute specializing in identifying genetic factors underlying childhood diseases and advancing precision medicine.
-
D.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
E.
Master of Science in Bioinformatics (information sciences concentration)
The Master of Science in Bioinformatics (information sciences concentration) is a graduate program that trains students to apply computational, data science, and information management methods to biological and biomedical data analysis.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69b3454a7c608190944f5455c8031d73 |
completed | March 12, 2026, 10:59 p.m. |
| NER | Named-entity recognition | batch_69b35697937c8190b91f72d9e4f945f6 |
completed | March 13, 2026, 12:13 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69b6285164b081908f144e74ae3a1be8 |
completed | March 15, 2026, 3:32 a.m. |
| NEDg | Description generation | batch_69b62954b77c8190968f844514656415 |
completed | March 15, 2026, 3:36 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69b62a0cd92c8190a9eee2a9d73fb679 |
completed | March 15, 2026, 3:39 a.m. |
Created at: March 12, 2026, 11:34 p.m.