Triple
T4277849
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | CRAN |
E97083
|
entity |
| Predicate | relatedTo |
P37
|
FINISHED |
| Object |
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
|
E426691
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Bioconductor | Statement: [CRAN, relatedTo, Bioconductor]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Bioconductor Context triple: [CRAN, relatedTo, Bioconductor]
-
A.
CRAN
CRAN is the Comprehensive R Archive Network, a primary repository for R packages, source code, and documentation used by the R programming community.
-
B.
RStudio
RStudio is an integrated development environment (IDE) for the R programming language, widely used for data analysis, visualization, and statistical computing.
-
C.
ICMBio
ICMBio is Brazil’s federal agency responsible for managing and protecting the country’s conservation units and biodiversity.
-
D.
Department of Computational Biology and Medical Sciences
The Department of Computational Biology and Medical Sciences is an academic unit specializing in the integration of computational methods with biological and medical research to advance understanding of complex life and health systems.
-
E.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Bioconductor Triple: [CRAN, relatedTo, Bioconductor]
Generated description
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Bioconductor Target entity description: Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
A.
CRAN
CRAN is the Comprehensive R Archive Network, a primary repository for R packages, source code, and documentation used by the R programming community.
-
B.
RStudio
RStudio is an integrated development environment (IDE) for the R programming language, widely used for data analysis, visualization, and statistical computing.
-
C.
ICMBio
ICMBio is Brazil’s federal agency responsible for managing and protecting the country’s conservation units and biodiversity.
-
D.
Department of Computational Biology and Medical Sciences
The Department of Computational Biology and Medical Sciences is an academic unit specializing in the integration of computational methods with biological and medical research to advance understanding of complex life and health systems.
-
E.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69b34544be3c819084d1ab82d29f90c5 |
completed | March 12, 2026, 10:59 p.m. |
| NER | Named-entity recognition | batch_69b3501ef1388190b0c968b069014a59 |
completed | March 12, 2026, 11:45 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69b5b7b3b52c8190ae7c05448faf5558 |
completed | March 14, 2026, 7:32 p.m. |
| NEDg | Description generation | batch_69b5b95083088190b0c993fa2fbc954c |
completed | March 14, 2026, 7:38 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69b5b9b8afcc8190822cfd560d064590 |
completed | March 14, 2026, 7:40 p.m. |
Created at: March 12, 2026, 11:07 p.m.