Triple

T3872107
Position Surface form Disambiguated ID Type / Status
Subject Caenorhabditis elegans E92409 entity
Predicate standardLabFood P17103 FINISHED
Object Escherichia coli OP50
Escherichia coli OP50 is a uracil-requiring laboratory E. coli strain commonly used as the standard bacterial food source for Caenorhabditis elegans in research.
E396233 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Escherichia coli OP50 | Statement: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Escherichia coli OP50
Context triple: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
  • A. Caenorhabditis elegans
    Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
  • B. Neurospora crassa
    Neurospora crassa is a filamentous red bread mold fungus widely used as a model organism in genetics and molecular biology.
  • C. Bacillus
    Bacillus is a genus of rod-shaped, endospore-forming bacteria that includes both harmless environmental species and notable pathogens such as Bacillus anthracis.
  • D. Saccharomyces cerevisiae
    Saccharomyces cerevisiae is a species of yeast widely used in baking, brewing, and scientific research as a model eukaryotic organism.
  • E. Drosophila melanogaster
    Drosophila melanogaster is a small fruit fly species widely used as a model organism in genetics and developmental biology research.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Escherichia coli OP50
Triple: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
Generated description
Escherichia coli OP50 is a uracil-requiring laboratory E. coli strain commonly used as the standard bacterial food source for Caenorhabditis elegans in research.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Escherichia coli OP50
Target entity description: Escherichia coli OP50 is a uracil-requiring laboratory E. coli strain commonly used as the standard bacterial food source for Caenorhabditis elegans in research.
  • A. Caenorhabditis elegans
    Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
  • B. Neurospora crassa
    Neurospora crassa is a filamentous red bread mold fungus widely used as a model organism in genetics and molecular biology.
  • C. Bacillus
    Bacillus is a genus of rod-shaped, endospore-forming bacteria that includes both harmless environmental species and notable pathogens such as Bacillus anthracis.
  • D. Saccharomyces cerevisiae
    Saccharomyces cerevisiae is a species of yeast widely used in baking, brewing, and scientific research as a model eukaryotic organism.
  • E. Drosophila melanogaster
    Drosophila melanogaster is a small fruit fly species widely used as a model organism in genetics and developmental biology research.
  • F. None of above. chosen
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: standardLabFood
Context triple: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
  • A. feedingStructure
    Indicates a relationship where one entity serves as the anatomical or mechanical structure used by another entity to obtain or ingest food.
  • B. primaryFood chosen
    Indicates that one entity serves as the main or most important food source for another entity.
  • C. feedingType
    Indicates the manner or method by which one entity provides nourishment or food to another.
  • D. mayBeGivenTo
    Indicates that something is permitted or eligible to be transferred, assigned, or provided from one entity to another.
  • E. typicalMeat
    Indicates that something is commonly or characteristically used or regarded as meat in a given context.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69aed967448c819086c4b358d37b25aa completed March 9, 2026, 2:29 p.m.
NER Named-entity recognition batch_69aeec5691148190b469af0bee9154db completed March 9, 2026, 3:50 p.m.
NED1 Entity disambiguation (via context triple) batch_69b51249f1ec8190a1f6cc191bc94421 completed March 14, 2026, 7:46 a.m.
NEDg Description generation batch_69b51352e2ec8190a207a6af96baaa33 completed March 14, 2026, 7:50 a.m.
NED2 Entity disambiguation (via description) batch_69b513e888008190892627805d2abd50 completed March 14, 2026, 7:53 a.m.
PD Predicate disambiguation batch_69aee754dddc8190936e1f9c40a770db completed March 9, 2026, 3:29 p.m.
Created at: March 9, 2026, 3:20 p.m.