Triple
T3872107
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Caenorhabditis elegans |
E92409
|
entity |
| Predicate | standardLabFood |
P17103
|
FINISHED |
| Object |
Escherichia coli OP50
Escherichia coli OP50 is a uracil-requiring laboratory E. coli strain commonly used as the standard bacterial food source for Caenorhabditis elegans in research.
|
E396233
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Escherichia coli OP50 | Statement: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Escherichia coli OP50 Context triple: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
-
A.
Caenorhabditis elegans
Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
-
B.
Neurospora crassa
Neurospora crassa is a filamentous red bread mold fungus widely used as a model organism in genetics and molecular biology.
-
C.
Bacillus
Bacillus is a genus of rod-shaped, endospore-forming bacteria that includes both harmless environmental species and notable pathogens such as Bacillus anthracis.
-
D.
Saccharomyces cerevisiae
Saccharomyces cerevisiae is a species of yeast widely used in baking, brewing, and scientific research as a model eukaryotic organism.
-
E.
Drosophila melanogaster
Drosophila melanogaster is a small fruit fly species widely used as a model organism in genetics and developmental biology research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Escherichia coli OP50 Triple: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
Generated description
Escherichia coli OP50 is a uracil-requiring laboratory E. coli strain commonly used as the standard bacterial food source for Caenorhabditis elegans in research.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Escherichia coli OP50 Target entity description: Escherichia coli OP50 is a uracil-requiring laboratory E. coli strain commonly used as the standard bacterial food source for Caenorhabditis elegans in research.
-
A.
Caenorhabditis elegans
Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
-
B.
Neurospora crassa
Neurospora crassa is a filamentous red bread mold fungus widely used as a model organism in genetics and molecular biology.
-
C.
Bacillus
Bacillus is a genus of rod-shaped, endospore-forming bacteria that includes both harmless environmental species and notable pathogens such as Bacillus anthracis.
-
D.
Saccharomyces cerevisiae
Saccharomyces cerevisiae is a species of yeast widely used in baking, brewing, and scientific research as a model eukaryotic organism.
-
E.
Drosophila melanogaster
Drosophila melanogaster is a small fruit fly species widely used as a model organism in genetics and developmental biology research.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: standardLabFood Context triple: [Caenorhabditis elegans, standardLabFood, Escherichia coli OP50]
-
A.
feedingStructure
Indicates a relationship where one entity serves as the anatomical or mechanical structure used by another entity to obtain or ingest food.
-
B.
primaryFood
chosen
Indicates that one entity serves as the main or most important food source for another entity.
-
C.
feedingType
Indicates the manner or method by which one entity provides nourishment or food to another.
-
D.
mayBeGivenTo
Indicates that something is permitted or eligible to be transferred, assigned, or provided from one entity to another.
-
E.
typicalMeat
Indicates that something is commonly or characteristically used or regarded as meat in a given context.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69aed967448c819086c4b358d37b25aa |
completed | March 9, 2026, 2:29 p.m. |
| NER | Named-entity recognition | batch_69aeec5691148190b469af0bee9154db |
completed | March 9, 2026, 3:50 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69b51249f1ec8190a1f6cc191bc94421 |
completed | March 14, 2026, 7:46 a.m. |
| NEDg | Description generation | batch_69b51352e2ec8190a207a6af96baaa33 |
completed | March 14, 2026, 7:50 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69b513e888008190892627805d2abd50 |
completed | March 14, 2026, 7:53 a.m. |
| PD | Predicate disambiguation | batch_69aee754dddc8190936e1f9c40a770db |
completed | March 9, 2026, 3:29 p.m. |
Created at: March 9, 2026, 3:20 p.m.