Triple
T3670758
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | tryptophan |
E77872
|
entity |
| Predicate | participatesInPathway |
P38196
|
FINISHED |
| Object | serotonin biosynthesis |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: serotonin biosynthesis | Statement: [tryptophan, participatesInPathway, serotonin biosynthesis]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: participatesInPathway Context triple: [tryptophan, participatesInPathway, serotonin biosynthesis]
-
A.
hasPathway
Indicates that there exists a route, channel, or sequence of steps through which one entity leads, connects, or gives access to another.
-
B.
supportsPathway
chosen
Indicates that one entity contributes to, enables, or maintains the functioning or progression of a specified pathway.
-
C.
isMetabolizedBy
Indicates that a substance is biochemically broken down or transformed through metabolic processes carried out by a specified organism, cell type, or enzyme system.
-
D.
regulatoryInteraction
Indicates a relationship where one entity modulates, controls, or influences the activity, expression, or function of another entity through regulatory mechanisms.
-
E.
affectsBiologicalProcess
Indicates a relationship where one entity produces a change or influence on a biological process of another entity or system.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69ad85e083008190b2e1b7085fe500bd |
completed | March 8, 2026, 2:21 p.m. |
| NER | Named-entity recognition | batch_69adc42c96648190abbd5d23b25d6a6b |
completed | March 8, 2026, 6:47 p.m. |
| PD | Predicate disambiguation | batch_69adb84a20288190a092e4a1b045fe3f |
completed | March 8, 2026, 5:56 p.m. |
Created at: March 8, 2026, 3:25 p.m.