Triple

T29154782
Position Surface form Disambiguated ID Type / Status
Subject Reactome pathways E739006 entity
Predicate visualizedWith P77199 FINISHED
Object Pathway Browser
Pathway Browser is an interactive web-based tool in the Reactome database that lets users explore, visualize, and analyze biological pathways and their molecular interactions.
 E739006 NE FINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Pathway Browser | Statement: [Reactome pathways, visualizedWith, Pathway Browser]
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Pathway Browser
Triple: [Reactome pathways, visualizedWith, Pathway Browser]
Generated description
Pathway Browser is an interactive web-based tool in the Reactome database that lets users explore, visualize, and analyze biological pathways and their molecular interactions.
PD Predicate disambiguation gpt-5-mini-2025-08-07 
Target predicate: visualizedWith
Context triple: [Reactome pathways, visualizedWith, Pathway Browser]
  • A. visualizedIn chosen
    Indicates that something is represented or depicted within a particular visual medium, view, or visualization.
  • B. visualizationMethod
    Indicates the technique or approach used to visually represent data, information, or concepts.
  • C. visualizationLibrary
    Indicates that an entity uses, depends on, or is implemented with a particular visualization library for rendering or displaying visual data.
  • D. visualCompanion
    Indicates that one entity serves as a visual counterpart, partner, or accompanying element to another in a visual context.
  • E. visualElements
    Indicates that one entity contains, uses, or is characterized by specific visual components or graphical features associated with another entity.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69f07cb46f148190874eb8576a447567 completed April 28, 2026, 9:24 a.m.
NER Named-entity recognition batch_69f67257b0448190a13011af81c81449 completed May 2, 2026, 9:53 p.m.
NED1 Entity disambiguation (via context triple) batch_6a255068d91c8190843dbe0ef8d63f1c completed June 7, 2026, 11:05 a.m.
NEDg Description generation batch_6a2554b16b8481908ffb9447fb3f35a5 completed June 7, 2026, 11:23 a.m.
NED2 Entity disambiguation (via description) batch_6a2558e69dfc81908eea54a231ab38e7 completed June 7, 2026, 11:41 a.m.
PD Predicate disambiguation batch_69f66ec5bf508190ad088b89455252bd completed May 2, 2026, 9:38 p.m.
Created at: April 28, 2026, 11:44 a.m.