Triple

T22932103
Position Surface form Disambiguated ID Type / Status
Subject ESummary E569468 entity
Predicate operatesOn P23 FINISHED
Object NCBI databases
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
 E1564058 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI databases | Statement: [ESummary, operatesOn, NCBI databases]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: NCBI databases
Context triple: [ESummary, operatesOn, NCBI databases]
  • A. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • B. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • C. NCBI Gene database
    The NCBI Gene database is a comprehensive public resource that provides curated information on genes from multiple organisms, including their sequences, functions, genomic context, and related literature.
  • D. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • E. BioProject database
    The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: NCBI databases
Triple: [ESummary, operatesOn, NCBI databases]
Generated description
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: NCBI databases
Target entity description: NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
  • A. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • B. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • C. NCBI Gene database
    The NCBI Gene database is a comprehensive public resource that provides curated information on genes from multiple organisms, including their sequences, functions, genomic context, and related literature.
  • D. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • E. BioProject database
    The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2458f7d008190901dccbaebeaba24 completed April 17, 2026, 2:37 p.m.
NER Named-entity recognition batch_69f1813260608190bb9e1ca704c7e12f completed April 29, 2026, 3:55 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0bca1027948190be094e0625b92b2e completed May 19, 2026, 2:25 a.m.
NEDg Description generation batch_6a0bcde52c1c81908a2202b6514536a4 completed May 19, 2026, 2:41 a.m.
NED2 Entity disambiguation (via description) batch_6a0bce4a1b448190a06944433ded563f completed May 19, 2026, 2:43 a.m.
Created at: April 17, 2026, 3:44 p.m.