Triple
T22932011
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Protein database |
E569466
|
entity |
| Predicate | integratedWith |
P2830
|
FINISHED |
| Object | GenBank |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: GenBank | Statement: [Protein database, integratedWith, GenBank]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: GenBank Context triple: [Protein database, integratedWith, GenBank]
-
A.
GenBank
chosen
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
D.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
-
E.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458f7d008190901dccbaebeaba24 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1813260608190bb9e1ca704c7e12f |
completed | April 29, 2026, 3:55 a.m. |
Created at: April 17, 2026, 3:44 p.m.