Triple

T22931979
Position Surface form Disambiguated ID Type / Status
Subject GTR Tests database E569465 entity
Predicate linkedTo P37 FINISHED
Object NCBI Gene database
The NCBI Gene database is a comprehensive public resource that provides curated information on genes from multiple organisms, including their sequences, functions, genomic context, and related literature.
E1562326 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI Gene database | Statement: [GTR Tests database, linkedTo, NCBI Gene database]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: NCBI Gene database
Context triple: [GTR Tests database, linkedTo, NCBI Gene database]
  • A. UniGene database
    The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
  • B. Ensembl
    Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
  • C. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: NCBI Gene database
Triple: [GTR Tests database, linkedTo, NCBI Gene database]
Generated description
The NCBI Gene database is a comprehensive public resource that provides curated information on genes from multiple organisms, including their sequences, functions, genomic context, and related literature.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: NCBI Gene database
Target entity description: The NCBI Gene database is a comprehensive public resource that provides curated information on genes from multiple organisms, including their sequences, functions, genomic context, and related literature.
  • A. UniGene database
    The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
  • B. Ensembl
    Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
  • C. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • D. National Center for Biotechnology Information
    The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
  • E. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2458f7d008190901dccbaebeaba24 completed April 17, 2026, 2:37 p.m.
NER Named-entity recognition batch_69f1813260608190bb9e1ca704c7e12f completed April 29, 2026, 3:55 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0bc24cd43c81908111b62945f91dda completed May 19, 2026, 1:52 a.m.
NEDg Description generation batch_6a0bc407cd448190bd843360d65fdf22 completed May 19, 2026, 1:59 a.m.
NED2 Entity disambiguation (via description) batch_6a0bc46fd3d0819094a532a8d6a0b9b2 completed May 19, 2026, 2:01 a.m.
Created at: April 17, 2026, 3:44 p.m.