Triple
T22693291
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | HGNC:28350 |
E561104
|
entity |
| Predicate | hasMolecularConsequence |
P149321
|
FINISHED |
| Object | RNA foci formation |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: RNA foci formation | Statement: [HGNC:28350, hasMolecularConsequence, RNA foci formation]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasMolecularConsequence Context triple: [HGNC:28350, hasMolecularConsequence, RNA foci formation]
-
A.
hasMolecularFunction
Indicates that an entity (typically a gene product or protein) performs or is associated with a specific molecular-level activity or function.
-
B.
hasConsequence
Indicates that one event, action, or condition leads to or results in another as its outcome or effect.
-
C.
hasMolecularTarget
Indicates that one entity (such as a drug or compound) is directed toward, binds to, or specifically interacts with a particular molecular target (such as a protein, receptor, or gene).
-
D.
hasConsequenceHypothesis
Indicates that one situation, event, or statement is hypothesized to lead to or imply a particular consequence.
-
E.
hasAminoAcidChange
Indicates that an entity (such as a protein or gene variant) involves or results in a specific change from one amino acid to another in its sequence.
- F. None of above. chosen
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2454d71b48190a1f80af9f82b6fcf |
completed | April 17, 2026, 2:35 p.m. |
| NER | Named-entity recognition | batch_69f1789c6ae481908975b7d27e7624ac |
completed | April 29, 2026, 3:18 a.m. |
| PD | Predicate disambiguation | batch_69ee62b2259c819091ed1387a748b9f3 |
completed | April 26, 2026, 7:08 p.m. |
| PDg | Predicate description generation | batch_69ee8843d3308190b6e22bb98ae5c3d8 |
completed | April 26, 2026, 9:48 p.m. |
Created at: April 17, 2026, 3:13 p.m.