Triple
T22492453
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Amphotericin B |
E556051
|
entity |
| Predicate | hasSpectrumIncludes |
P67397
|
FINISHED |
| Object |
Histoplasma capsulatum
Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
|
E1539714
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Histoplasma capsulatum | Statement: [Amphotericin B, hasSpectrumIncludes, Histoplasma capsulatum]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Histoplasma capsulatum Context triple: [Amphotericin B, hasSpectrumIncludes, Histoplasma capsulatum]
-
A.
Sporothrix
Sporothrix is a genus of dimorphic fungi best known for causing sporotrichosis, a subcutaneous infection often acquired from soil, plants, or animals.
-
B.
Pseudallescheria
Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
-
C.
Aspergillus fumigatus
Aspergillus fumigatus is a common airborne filamentous fungus and opportunistic human pathogen, particularly causing severe infections in immunocompromised individuals.
-
D.
Nocardia
Nocardia is a genus of filamentous, partially acid-fast bacteria known for causing opportunistic infections, particularly in the lungs, brain, and skin of immunocompromised individuals.
-
E.
Nocardia asteroides
Nocardia asteroides is a species of aerobic, filamentous, weakly acid-fast bacterium that commonly causes opportunistic pulmonary and disseminated infections, particularly in immunocompromised individuals.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Histoplasma capsulatum Triple: [Amphotericin B, hasSpectrumIncludes, Histoplasma capsulatum]
Generated description
Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Histoplasma capsulatum Target entity description: Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
-
A.
Sporothrix
Sporothrix is a genus of dimorphic fungi best known for causing sporotrichosis, a subcutaneous infection often acquired from soil, plants, or animals.
-
B.
Pseudallescheria
Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
-
C.
Aspergillus fumigatus
Aspergillus fumigatus is a common airborne filamentous fungus and opportunistic human pathogen, particularly causing severe infections in immunocompromised individuals.
-
D.
Nocardia
Nocardia is a genus of filamentous, partially acid-fast bacteria known for causing opportunistic infections, particularly in the lungs, brain, and skin of immunocompromised individuals.
-
E.
Nocardia asteroides
Nocardia asteroides is a species of aerobic, filamentous, weakly acid-fast bacterium that commonly causes opportunistic pulmonary and disseminated infections, particularly in immunocompromised individuals.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e11e5445bc8190b6a9481926db3355 |
completed | April 16, 2026, 5:37 p.m. |
| NER | Named-entity recognition | batch_69f15cb01b3481908a9143503b75167f |
completed | April 29, 2026, 1:19 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a0b126c38fc819090458000ba82b176 |
completed | May 18, 2026, 1:21 p.m. |
| NEDg | Description generation | batch_6a0b14a059e4819095a3d467c469e783 |
completed | May 18, 2026, 1:31 p.m. |
| NED2 | Entity disambiguation (via description) | batch_6a0b15696e588190a2c76b0a4af285a4 |
completed | May 18, 2026, 1:34 p.m. |
Created at: April 16, 2026, 8:49 p.m.