Triple

T2108023
Position Surface form Disambiguated ID Type / Status
Subject Thaumarchaeota E42438 entity
Predicate typeSpecies P7381 FINISHED
Object Nitrosopumilus maritimus (for marine AOA clade)
Nitrosopumilus maritimus is a marine ammonia-oxidizing archaeon that serves as a key model organism for studying the ecology and physiology of oceanic Thaumarchaeota.
 E42438 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Nitrosopumilus maritimus (for marine AOA clade) | Statement: [Thaumarchaeota, typeSpecies, Nitrosopumilus maritimus (for marine AOA clade)]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Nitrosopumilus maritimus (for marine AOA clade)
Context triple: [Thaumarchaeota, typeSpecies, Nitrosopumilus maritimus (for marine AOA clade)]
  • A. Thaumarchaeota
    Thaumarchaeota are a phylum of Archaea known primarily for their role in ammonia oxidation and global nitrogen cycling in diverse environments.
  • B. Nanoarchaeota
    Nanoarchaeota is a phylum of ultra-small, symbiotic archaea known for their reduced genomes and association with other archaeal hosts in extreme environments.
  • C. Crenarchaeota
    Crenarchaeota is a major phylum of Archaea that includes many thermophilic and chemolithoautotrophic microorganisms commonly found in extreme environments such as hot springs and deep-sea hydrothermal vents.
  • D. Korarchaeota
    Korarchaeota are a deeply branching, poorly understood lineage of Archaea typically found in high-temperature environments and known mainly from environmental DNA rather than cultivated representatives.
  • E. Euryarchaeota
    Euryarchaeota is a major phylum of Archaea that includes diverse microorganisms such as many methanogens, extreme halophiles, and some thermophiles.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Nitrosopumilus maritimus (for marine AOA clade)
Triple: [Thaumarchaeota, typeSpecies, Nitrosopumilus maritimus (for marine AOA clade)]
Generated description
Nitrosopumilus maritimus is a marine ammonia-oxidizing archaeon that serves as a key model organism for studying the ecology and physiology of oceanic Thaumarchaeota.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: Nitrosopumilus maritimus (for marine AOA clade)
Target entity description: Nitrosopumilus maritimus is a marine ammonia-oxidizing archaeon that serves as a key model organism for studying the ecology and physiology of oceanic Thaumarchaeota.
  • A. Thaumarchaeota chosen
    Thaumarchaeota are a phylum of Archaea known primarily for their role in ammonia oxidation and global nitrogen cycling in diverse environments.
  • B. Nanoarchaeota
    Nanoarchaeota is a phylum of ultra-small, symbiotic archaea known for their reduced genomes and association with other archaeal hosts in extreme environments.
  • C. Crenarchaeota
    Crenarchaeota is a major phylum of Archaea that includes many thermophilic and chemolithoautotrophic microorganisms commonly found in extreme environments such as hot springs and deep-sea hydrothermal vents.
  • D. Korarchaeota
    Korarchaeota are a deeply branching, poorly understood lineage of Archaea typically found in high-temperature environments and known mainly from environmental DNA rather than cultivated representatives.
  • E. Euryarchaeota
    Euryarchaeota is a major phylum of Archaea that includes diverse microorganisms such as many methanogens, extreme halophiles, and some thermophiles.
  • F. None of above.

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69a8871040f08190aac2e2d0ab6b47ad completed March 4, 2026, 7:25 p.m.
NER Named-entity recognition batch_69abbae03f308190841f5a419bb821f6 completed March 7, 2026, 5:42 a.m.
NED1 Entity disambiguation (via context triple) batch_69ae306ff3a481909ce3c34edb3ab0e2 completed March 9, 2026, 2:29 a.m.
NEDg Description generation batch_69ae3112c4648190952ad02ef8037b36 completed March 9, 2026, 2:31 a.m.
NED2 Entity disambiguation (via description) batch_69ae3199909881909ffca021098c98ea completed March 9, 2026, 2:34 a.m.
Created at: March 4, 2026, 7:43 p.m.