Triple
T11959201
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | CodeView |
E284625
|
entity |
| Predicate | formatFamily |
P77912
|
FINISHED |
| Object | PDB |
E700433
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: PDB | Statement: [CodeView, formatFamily, PDB]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: PDB Context triple: [CodeView, formatFamily, PDB]
-
A.
PDB
chosen
PDB (Program Database) is a file format used by Microsoft development tools to store debugging and project state information for compiled programs.
-
B.
pdb
pdb is Python’s built-in interactive debugger, used to inspect and control the execution of Python programs for troubleshooting and development.
-
C.
Protein Data Bank
The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.
-
D.
EMBL-EBI AlphaFold Protein Structure Database
The EMBL-EBI AlphaFold Protein Structure Database is a publicly accessible resource providing predicted 3D structures of proteins generated by DeepMind’s AlphaFold system.
-
E.
UniParc
UniParc is a comprehensive, non-redundant archive that stores and tracks all known unique protein sequences from multiple sources over time.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: formatFamily Context triple: [CodeView, formatFamily, PDB]
-
A.
formatCategory
chosen
Indicates how an item is classified or grouped according to its format or presentation type.
-
B.
syntaxFamily
Indicates that two linguistic elements share a common syntactic type, pattern, or structural classification within a grammar system.
-
C.
styleFamily
Indicates that one style is grouped within the same stylistic family or category as another style.
-
D.
typeFamily
Indicates that one entity is classified as a family-related type or belongs to a family category in relation to another entity.
-
E.
featuresFamilyName
Indicates that an entity is associated with or displays a particular family name.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6ab2db38c8190b1f0ed6663ef8ada |
completed | April 8, 2026, 7:23 p.m. |
| NER | Named-entity recognition | batch_69d9036941948190b150369094551731 |
completed | April 10, 2026, 2:04 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69f459210d1c8190953cd01da3d2ad04 |
completed | May 1, 2026, 7:41 a.m. |
| PD | Predicate disambiguation | batch_69d8bb40f30c8190a0e0719bd67542bf |
completed | April 10, 2026, 8:56 a.m. |
Created at: April 8, 2026, 9:45 p.m.