Triple
T11074195
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | DNA ligase |
E261823
|
entity |
| Predicate | formsBondBetween |
P33754
|
FINISHED |
| Object | 3'-hydroxyl group of one nucleotide |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: 3'-hydroxyl group of one nucleotide | Statement: [DNA ligase, formsBondBetween, 3'-hydroxyl group of one nucleotide]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: formsBondBetween Context triple: [DNA ligase, formsBondBetween, 3'-hydroxyl group of one nucleotide]
-
A.
bondedWith
Indicates that two entities are joined by a strong, enduring connection or attachment, whether emotional, social, or structural.
-
B.
pairBond
Indicates a long-term, typically exclusive social or reproductive partnership formed between two individuals.
-
C.
formsPrimaryLinkBetween
Indicates that one entity serves as the main or most important connection or linkage between two other entities.
-
D.
definesRelationshipBetween
Indicates that one entity specifies or establishes the nature, type, or rules of a relationship that exists between two or more other entities.
-
E.
binding
chosen
Indicates that one entity physically or chemically attaches, adheres, or forms a stable association with another entity.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aa9983c08190b0ef61603b69feac |
completed | April 8, 2026, 7:20 p.m. |
| NER | Named-entity recognition | batch_69d7994e32fc8190a6591d9e82b68f75 |
completed | April 9, 2026, 12:19 p.m. |
| PD | Predicate disambiguation | batch_69d74415403c81909778bcd829e8832e |
completed | April 9, 2026, 6:15 a.m. |
Created at: April 8, 2026, 9:26 p.m.