PubChem BioAssay
E569125
PubChem BioAssay is a public database of biological activity results from high-throughput screening and other assays, used to link chemical substances with their biological effects.
All labels observed (1)
| Label | Occurrences |
|---|---|
| PubChem BioAssay canonical | 3 |
How this entity was disambiguated
This entity first appeared as the object of triple T6098297 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: PubChem BioAssay Context triple: [Entrez system, hasPart, PubChem BioAssay]
-
A.
PaperChem
PaperChem is a specialized database focused on chemical and materials science information related to paper and pulp research, accessible through the Engineering Village platform.
-
B.
Reaxys
Reaxys is a comprehensive chemistry research database and workflow tool that provides curated information on chemical substances, reactions, and properties for scientists and researchers.
-
C.
SciFinder-n
SciFinder-n is a comprehensive research discovery platform from Chemical Abstracts Service that enables scientists to search and analyze chemical substances, reactions, literature, and related scientific data.
-
D.
ICH S9 Nonclinical Evaluation for Anticancer Pharmaceuticals
ICH S9 Nonclinical Evaluation for Anticancer Pharmaceuticals is an international regulatory guideline that outlines the nonclinical safety studies needed to support the development and approval of anticancer drugs in humans.
-
E.
ICH S6 Preclinical Safety Evaluation of Biotechnology-Derived Pharmaceuticals
ICH S6 Preclinical Safety Evaluation of Biotechnology-Derived Pharmaceuticals is an international guideline that outlines the nonclinical safety testing requirements for biotechnological products such as therapeutic proteins and monoclonal antibodies to support their clinical development and marketing authorization.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: PubChem BioAssay Target entity description: PubChem BioAssay is a public database of biological activity results from high-throughput screening and other assays, used to link chemical substances with their biological effects.
-
A.
PaperChem
PaperChem is a specialized database focused on chemical and materials science information related to paper and pulp research, accessible through the Engineering Village platform.
-
B.
Reaxys
Reaxys is a comprehensive chemistry research database and workflow tool that provides curated information on chemical substances, reactions, and properties for scientists and researchers.
-
C.
SciFinder-n
SciFinder-n is a comprehensive research discovery platform from Chemical Abstracts Service that enables scientists to search and analyze chemical substances, reactions, literature, and related scientific data.
-
D.
ICH S9 Nonclinical Evaluation for Anticancer Pharmaceuticals
ICH S9 Nonclinical Evaluation for Anticancer Pharmaceuticals is an international regulatory guideline that outlines the nonclinical safety studies needed to support the development and approval of anticancer drugs in humans.
-
E.
ICH S6 Preclinical Safety Evaluation of Biotechnology-Derived Pharmaceuticals
ICH S6 Preclinical Safety Evaluation of Biotechnology-Derived Pharmaceuticals is an international guideline that outlines the nonclinical safety testing requirements for biotechnological products such as therapeutic proteins and monoclonal antibodies to support their clinical development and marketing authorization.
- F. None of above. chosen
Statements (55)
| Predicate | Object |
|---|---|
| instanceOf |
biological database
ⓘ
public database ⓘ |
| AIDStandsFor | Assay ID ⓘ |
| dataAccessibleVia |
FTP download
ⓘ
NCBI E-utilities API ⓘ RESTful services ⓘ web interface ⓘ |
| focusesOn |
RNAi screening data
ⓘ
bioassays ⓘ biochemical assays ⓘ biological activity data ⓘ cell-based assays ⓘ chemical–biology interactions ⓘ high-throughput screening assays ⓘ small molecule bioactivity ⓘ |
| hasDataType |
confirmatory assay data
ⓘ
primary screening data ⓘ quantitative high-throughput screening data ⓘ summary assay data ⓘ |
| hasParentOrganization |
NIH
ⓘ
linked to:
National Institutes of Health
National Institutes of Health ⓘ |
| hasURL | https://pubchem.ncbi.nlm.nih.gov/bioassay ⓘ |
| hostedBy |
NLM
ⓘ
linked to:
United States National Library of Medicine
National Library of Medicine ⓘ
linked to:
United States National Library of Medicine
|
| integratesWith |
biological pathway databases
ⓘ
external chemical databases ⓘ other NCBI resources ⓘ |
| isComponentOf |
NCBI Entrez system
ⓘ
linked to:
Entrez system
PubChem suite of databases ⓘ
linked to:
PubChem
|
| licenseType | open data ⓘ |
| linkedTo |
PubChem Compound
ⓘ
PubChem Gene ⓘ
linked to:
PubChem
PubChem Protein ⓘ
linked to:
PubChem
PubChem Substance ⓘ PubChem pathway information ⓘ |
| locatedIn |
United States
ⓘ
linked to:
United States of America
|
| maintainedBy |
NCBI
ⓘ
National Center for Biotechnology Information ⓘ |
| operatedBy | NCBI ⓘ |
| partOf | PubChem ⓘ |
| provides |
assay descriptions
ⓘ
assay protocols ⓘ bioactivity outcomes ⓘ dose–response data ⓘ screening results ⓘ target annotations ⓘ |
| supports | open access to bioactivity data ⓘ |
| usedFor |
chemical genomics
ⓘ
cheminformatics analysis ⓘ drug discovery research ⓘ hit identification ⓘ mechanism-of-action studies ⓘ structure–activity relationship analysis ⓘ toxicology studies ⓘ |
| usesIdentifierType | AID ⓘ |
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: PubChem BioAssay Description of subject: PubChem BioAssay is a public database of biological activity results from high-throughput screening and other assays, used to link chemical substances with their biological effects.
Referenced by (3)
Full triples — surface form annotated when it differs from this entity's canonical label.